WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0001.2.1 Sequence Name  B0001.2.1
Length (nt)  2923   Chromosome Location  IV: 12146481-12150977
Chromosome . Primary Identifier  IV Chromosome Location . Start  12146481
Chromosome Location . End  12150977 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0001.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007087 B0001.2 B0001.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0001.2 B0001.2 2781   IV: 12146610-12146836

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0001.2.1 12146481 12150977 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146597   356   IV: 12146481-12146836 Caenorhabditis elegans
Exon146598   362   IV: 12146893-12147254 Caenorhabditis elegans
Exon146599   323   IV: 12147536-12147858 Caenorhabditis elegans
Exon146600   120   IV: 12147911-12148030 Caenorhabditis elegans
Exon146601   241   IV: 12148075-12148315 Caenorhabditis elegans
Exon146602   101   IV: 12148369-12148469 Caenorhabditis elegans
Exon146603   357   IV: 12149005-12149361 Caenorhabditis elegans
Exon146604   694   IV: 12149409-12150102 Caenorhabditis elegans
Exon146605   131   IV: 12150482-12150612 Caenorhabditis elegans
Exon146606   172   IV: 12150667-12150838 Caenorhabditis elegans
Exon146607   66   IV: 12150912-12150977 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0001.2.1 12146481 12150977 -1

1 Sequence

Length
2923

1 Sequence Ontology Term

Identifier Name Description
transcript