WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F20B10.1.1 Sequence Name  F20B10.1.1
Length (nt)  3692   Chromosome Location  IV: 12170824-12178335
Chromosome . Primary Identifier  IV Chromosome Location . Start  12170824
Chromosome Location . End  12178335 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F20B10.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003772 nlr-1 F20B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20B10.1 F20B10.1 3543   IV: 12170973-12171079

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F20B10.1.1 12170824 12178335 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146694   256   IV: 12170824-12171079 Caenorhabditis elegans
Exon146695   108   IV: 12171128-12171235 Caenorhabditis elegans
Exon146696   128   IV: 12171290-12171417 Caenorhabditis elegans
Exon146697   121   IV: 12171512-12171632 Caenorhabditis elegans
Exon146698   213   IV: 12171685-12171897 Caenorhabditis elegans
Exon146699   306   IV: 12172172-12172477 Caenorhabditis elegans
Exon146700   227   IV: 12172522-12172748 Caenorhabditis elegans
Exon146701   886   IV: 12172958-12173843 Caenorhabditis elegans
Exon146702   351   IV: 12174196-12174546 Caenorhabditis elegans
Exon146703   300   IV: 12174594-12174893 Caenorhabditis elegans
Exon146704   61   IV: 12175399-12175459 Caenorhabditis elegans
Exon146705   108   IV: 12175583-12175690 Caenorhabditis elegans
Exon146706   263   IV: 12175741-12176003 Caenorhabditis elegans
Exon146707   142   IV: 12176579-12176720 Caenorhabditis elegans
Exon146708   170   IV: 12176854-12177023 Caenorhabditis elegans
Exon146710   52   IV: 12178284-12178335 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F20B10.1.1 12170824 12178335 -1

1 Sequence

Length
3692

1 Sequence Ontology Term

Identifier Name Description
transcript