WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42C1.4a.1 Sequence Name  C42C1.4a.1
Length (nt)  3989   Chromosome Location  IV: 12270490-12275992
Chromosome . Primary Identifier  IV Chromosome Location . Start  12270490
Chromosome Location . End  12275992 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42C1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016582 vps-8 C42C1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42C1.4a C42C1.4a 3780   IV: 12270690-12270870

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42C1.4a.1 12270490 12275992 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146872   381   IV: 12270490-12270870 Caenorhabditis elegans
Exon146876   125   IV: 12270920-12271044 Caenorhabditis elegans
Exon146878   82   IV: 12271384-12271465 Caenorhabditis elegans
Exon146880   256   IV: 12271517-12271772 Caenorhabditis elegans
Exon146882   469   IV: 12271831-12272299 Caenorhabditis elegans
Exon146884   426   IV: 12272344-12272769 Caenorhabditis elegans
Exon146886   342   IV: 12272826-12273167 Caenorhabditis elegans
Exon146888   909   IV: 12273225-12274133 Caenorhabditis elegans
Exon146890   501   IV: 12274197-12274697 Caenorhabditis elegans
Exon146893   239   IV: 12274750-12274988 Caenorhabditis elegans
Exon146894   154   IV: 12275684-12275837 Caenorhabditis elegans
Exon146895   105   IV: 12275888-12275992 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42C1.4a.1 12270490 12275992 -1

1 Sequence

Length
3989

1 Sequence Ontology Term

Identifier Name Description
transcript