WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C42C1.5 Sequence Name  C42C1.5
Length (nt)  1098   Chromosome Location  IV: 12276435-12276527
Chromosome . Primary Identifier  IV Chromosome Location . Start  12276435
Chromosome Location . End  12276527
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42C1.5

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE40443 TAG-335 40.1 365 Caenorhabditis elegans
 

Other

18 RNAi

WormBase ID
WBRNAi00042342
WBRNAi00042343
WBRNAi00099782
WBRNAi00085681
WBRNAi00094194
WBRNAi00029745
WBRNAi00100747
WBRNAi00099176
WBRNAi00071481
WBRNAi00099378
WBRNAi00099580
WBRNAi00008514
WBRNAi00024800
WBRNAi00099999
WBRNAi00100373
WBRNAi00100186
WBRNAi00100560
WBRNAi00100934

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C42C1.5 12276435 12276527 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016583 tag-335 C42C1.5 Caenorhabditis elegans

4 Locations


Feature . Primary Identifier
Start End Strand
CDS:C42C1.5 12276435 12276527 -1
CDS:C42C1.5 12276585 12276689 -1
CDS:C42C1.5 12277084 12277202 -1
CDS:C42C1.5 12277251 12278031 -1

1 Sequence

Length
1098

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C42C1.5.2 C42C1.5.2 1478   IV: 12276083-12278059
Transcript:C42C1.5.1 C42C1.5.1 1662   IV: 12276090-12278594