WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC518.1e.1 Sequence Name  ZC518.1e.1
Length (nt)  1823   Chromosome Location  IV: 12349939-12355724
Chromosome . Primary Identifier  IV Chromosome Location . Start  12349939
Chromosome Location . End  12355724 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC518.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013921 best-22 ZC518.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC518.1e ZC518.1e 1533   IV: 12349998-12350087

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZC518.1e.1 12349939 12355724 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147085   149   IV: 12349939-12350087 Caenorhabditis elegans
Exon147095   89   IV: 12350655-12350743 Caenorhabditis elegans
Exon147101   138   IV: 12350790-12350927 Caenorhabditis elegans
Exon147107   400   IV: 12351261-12351660 Caenorhabditis elegans
Exon147113   84   IV: 12351714-12351797 Caenorhabditis elegans
Exon147119   144   IV: 12352168-12352311 Caenorhabditis elegans
Exon147124   42   IV: 12353014-12353055 Caenorhabditis elegans
Exon147129   152   IV: 12353144-12353295 Caenorhabditis elegans
Exon147135   76   IV: 12353343-12353418 Caenorhabditis elegans
Exon147141   119   IV: 12353686-12353804 Caenorhabditis elegans
Exon147144   33   IV: 12353897-12353929 Caenorhabditis elegans
Exon147150   62   IV: 12354096-12354157 Caenorhabditis elegans
Exon147158   335   IV: 12355390-12355724 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZC518.1e.1 12349939 12355724 1

1 Sequence

Length
1823

1 Sequence Ontology Term

Identifier Name Description
transcript