WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC518.1c.1 Sequence Name  ZC518.1c.1
Length (nt)  1890   Chromosome Location  IV: 12349947-12355720
Chromosome . Primary Identifier  IV Chromosome Location . Start  12349947
Chromosome Location . End  12355720 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC518.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013921 best-22 ZC518.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC518.1c ZC518.1c 1452   IV: 12349998-12350087

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZC518.1c.1 12349947 12355720 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147090   141   IV: 12349947-12350087 Caenorhabditis elegans
Exon147093   89   IV: 12350655-12350743 Caenorhabditis elegans
Exon147099   138   IV: 12350790-12350927 Caenorhabditis elegans
Exon147105   400   IV: 12351261-12351660 Caenorhabditis elegans
Exon147111   84   IV: 12351714-12351797 Caenorhabditis elegans
Exon147117   144   IV: 12352168-12352311 Caenorhabditis elegans
Exon147123   42   IV: 12353014-12353055 Caenorhabditis elegans
Exon147127   152   IV: 12353144-12353295 Caenorhabditis elegans
Exon147133   76   IV: 12353343-12353418 Caenorhabditis elegans
Exon147139   119   IV: 12353686-12353804 Caenorhabditis elegans
Exon147148   62   IV: 12354096-12354157 Caenorhabditis elegans
Exon147152   112   IV: 12354507-12354618 Caenorhabditis elegans
Exon147154   331   IV: 12355390-12355720 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZC518.1c.1 12349947 12355720 1

1 Sequence

Length
1890

1 Sequence Ontology Term

Identifier Name Description
transcript