WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04A11.6.1 Sequence Name  T04A11.6.1
Length (nt)  3132   Chromosome Location  IV: 12490791-12495298
Chromosome . Primary Identifier  IV Chromosome Location . Start  12490791
Chromosome Location . End  12495298 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04A11.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001865 him-6 T04A11.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04A11.6 T04A11.6 2967   IV: 12490798-12491098

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T04A11.6.1 12490791 12495298 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147582   308   IV: 12490791-12491098 Caenorhabditis elegans
Exon147583   632   IV: 12491155-12491786 Caenorhabditis elegans
Exon147584   114   IV: 12491877-12491990 Caenorhabditis elegans
Exon147585   168   IV: 12492042-12492209 Caenorhabditis elegans
Exon147586   221   IV: 12492271-12492491 Caenorhabditis elegans
Exon147587   323   IV: 12492541-12492863 Caenorhabditis elegans
Exon147588   119   IV: 12493296-12493414 Caenorhabditis elegans
Exon147589   155   IV: 12493461-12493615 Caenorhabditis elegans
Exon147590   265   IV: 12493963-12494227 Caenorhabditis elegans
Exon147591   308   IV: 12494328-12494635 Caenorhabditis elegans
Exon147592   53   IV: 12494682-12494734 Caenorhabditis elegans
Exon147593   175   IV: 12494788-12494962 Caenorhabditis elegans
Exon147594   291   IV: 12495008-12495298 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T04A11.6.1 12490791 12495298 1

1 Sequence

Length
3132

1 Sequence Ontology Term

Identifier Name Description
transcript