WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53B2.5.1 Sequence Name  F53B2.5.1
Length (nt)  1472   Chromosome Location  IV: 12528529-12531147
Chromosome . Primary Identifier  IV Chromosome Location . Start  12528529
Chromosome Location . End  12531147 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B2.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009956 F53B2.5 F53B2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53B2.5 F53B2.5 1431   IV: 12528563-12528703

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53B2.5.1 12528529 12531147 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147656   175   IV: 12528529-12528703 Caenorhabditis elegans
Exon147657   234   IV: 12528746-12528979 Caenorhabditis elegans
Exon147658   74   IV: 12529298-12529371 Caenorhabditis elegans
Exon147659   91   IV: 12529419-12529509 Caenorhabditis elegans
Exon147660   174   IV: 12529555-12529728 Caenorhabditis elegans
Exon147662   246   IV: 12529778-12530023 Caenorhabditis elegans
Exon147663   138   IV: 12530184-12530321 Caenorhabditis elegans
Exon147664   126   IV: 12530366-12530491 Caenorhabditis elegans
Exon147665   171   IV: 12530540-12530710 Caenorhabditis elegans
Exon147666   43   IV: 12531105-12531147 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53B2.5.1 12528529 12531147 -1

1 Sequence

Length
1472

1 Sequence Ontology Term

Identifier Name Description
transcript