WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55D9A.1a.1 Sequence Name  Y55D9A.1a.1
Length (nt)  2859   Chromosome Location  IV: 12605700-12614723
Chromosome . Primary Identifier  IV Chromosome Location . Start  12605700
Chromosome Location . End  12614723 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55D9A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013223 efa-6 Y55D9A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55D9A.1a Y55D9A.1a 2451   IV: 12606104-12606289

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55D9A.1a.1 12605700 12614723 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147813   590   IV: 12605700-12606289 Caenorhabditis elegans
Exon147815   506   IV: 12606959-12607464 Caenorhabditis elegans
Exon147819   533   IV: 12609868-12610400 Caenorhabditis elegans
Exon147823   184   IV: 12610454-12610637 Caenorhabditis elegans
Exon147827   235   IV: 12610756-12610990 Caenorhabditis elegans
Exon147831   122   IV: 12611295-12611416 Caenorhabditis elegans
Exon147836   153   IV: 12611800-12611952 Caenorhabditis elegans
Exon147838   234   IV: 12613390-12613623 Caenorhabditis elegans
Exon147841   148   IV: 12614050-12614197 Caenorhabditis elegans
Exon147844   154   IV: 12614570-12614723 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55D9A.1a.1 12605700 12614723 -1

1 Sequence

Length
2859

1 Sequence Ontology Term

Identifier Name Description
transcript