WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08E7.9.1 Sequence Name  K08E7.9.1
Length (nt)  4092   Chromosome Location  IV: 12591704-12599169
Chromosome . Primary Identifier  IV Chromosome Location . Start  12591704
Chromosome Location . End  12599169 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08E7.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003995 pgp-1 K08E7.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08E7.9 K08E7.9 3966   IV: 12591828-12591904

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08E7.9.1 12591704 12599169 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147833   201   IV: 12591704-12591904 Caenorhabditis elegans
Exon147834   354   IV: 12591957-12592310 Caenorhabditis elegans
Exon147835   322   IV: 12592361-12592682 Caenorhabditis elegans
Exon147836   262   IV: 12592732-12592993 Caenorhabditis elegans
Exon147837   670   IV: 12593150-12593819 Caenorhabditis elegans
Exon147838   288   IV: 12593918-12594205 Caenorhabditis elegans
Exon147843   454   IV: 12594852-12595305 Caenorhabditis elegans
Exon147844   354   IV: 12595586-12595939 Caenorhabditis elegans
Exon147845   114   IV: 12596062-12596175 Caenorhabditis elegans
Exon147846   469   IV: 12596244-12596712 Caenorhabditis elegans
Exon147847   247   IV: 12596786-12597032 Caenorhabditis elegans
Exon147848   160   IV: 12597166-12597325 Caenorhabditis elegans
Exon147849   85   IV: 12598188-12598272 Caenorhabditis elegans
Exon147850   112   IV: 12599058-12599169 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08E7.9.1 12591704 12599169 -1

1 Sequence

Length
4092

1 Sequence Ontology Term

Identifier Name Description
transcript