WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C26H9A.1a.1 Sequence Name  C26H9A.1a.1
Length (nt)  3066   Chromosome Location  IV: 12643247-12650597
Chromosome . Primary Identifier  IV Chromosome Location . Start  12643247
Chromosome Location . End  12650597 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C26H9A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006916 vha-7 C26H9A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C26H9A.1a C26H9A.1a 2901   IV: 12643247-12643495

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C26H9A.1a.1 12643247 12650597 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147885   249   IV: 12643247-12643495 Caenorhabditis elegans
Exon147886   315   IV: 12643549-12643863 Caenorhabditis elegans
Exon147888   57   IV: 12644264-12644320 Caenorhabditis elegans
Exon147890   92   IV: 12644374-12644465 Caenorhabditis elegans
Exon147892   127   IV: 12644672-12644798 Caenorhabditis elegans
Exon147894   83   IV: 12644845-12644927 Caenorhabditis elegans
Exon147896   127   IV: 12644979-12645105 Caenorhabditis elegans
Exon147898   90   IV: 12645164-12645253 Caenorhabditis elegans
Exon147900   87   IV: 12645301-12645387 Caenorhabditis elegans
Exon147902   151   IV: 12645898-12646048 Caenorhabditis elegans
Exon147904   140   IV: 12646506-12646645 Caenorhabditis elegans
Exon147906   137   IV: 12646687-12646823 Caenorhabditis elegans
Exon147908   94   IV: 12646871-12646964 Caenorhabditis elegans
Exon147910   146   IV: 12647340-12647485 Caenorhabditis elegans
Exon147912   152   IV: 12648071-12648222 Caenorhabditis elegans
Exon147914   134   IV: 12648271-12648404 Caenorhabditis elegans
Exon147916   201   IV: 12648589-12648789 Caenorhabditis elegans
Exon147918   172   IV: 12649004-12649175 Caenorhabditis elegans
Exon147920   110   IV: 12649228-12649337 Caenorhabditis elegans
Exon147922   402   IV: 12650196-12650597 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C26H9A.1a.1 12643247 12650597 1

1 Sequence

Length
3066

1 Sequence Ontology Term

Identifier Name Description
transcript