WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C26H9A.1a.1 Sequence Name  C26H9A.1a.1
Length (nt)  3066   Chromosome Location  IV: 12643247-12650597
Chromosome . Primary Identifier  IV Chromosome Location . Start  12643247
Chromosome Location . End  12650597 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C26H9A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006916 vha-7 C26H9A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C26H9A.1a C26H9A.1a 2901   IV: 12643247-12643495

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C26H9A.1a.1 12643247 12650597 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147940   249   IV: 12643247-12643495 Caenorhabditis elegans
Exon147941   315   IV: 12643549-12643863 Caenorhabditis elegans
Exon147943   57   IV: 12644264-12644320 Caenorhabditis elegans
Exon147945   92   IV: 12644374-12644465 Caenorhabditis elegans
Exon147947   127   IV: 12644672-12644798 Caenorhabditis elegans
Exon147949   83   IV: 12644845-12644927 Caenorhabditis elegans
Exon147951   127   IV: 12644979-12645105 Caenorhabditis elegans
Exon147953   90   IV: 12645164-12645253 Caenorhabditis elegans
Exon147955   87   IV: 12645301-12645387 Caenorhabditis elegans
Exon147957   151   IV: 12645898-12646048 Caenorhabditis elegans
Exon147959   140   IV: 12646506-12646645 Caenorhabditis elegans
Exon147961   137   IV: 12646687-12646823 Caenorhabditis elegans
Exon147963   94   IV: 12646871-12646964 Caenorhabditis elegans
Exon147965   146   IV: 12647340-12647485 Caenorhabditis elegans
Exon147967   152   IV: 12648071-12648222 Caenorhabditis elegans
Exon147969   134   IV: 12648271-12648404 Caenorhabditis elegans
Exon147971   201   IV: 12648589-12648789 Caenorhabditis elegans
Exon147973   172   IV: 12649004-12649175 Caenorhabditis elegans
Exon147975   110   IV: 12649228-12649337 Caenorhabditis elegans
Exon147977   402   IV: 12650196-12650597 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C26H9A.1a.1 12643247 12650597 1

1 Sequence

Length
3066

1 Sequence Ontology Term

Identifier Name Description
transcript