WormMine: Gene WBGene00045184

• WormBase Gene ID: WBGene00045184
• Gene Name: T23F6.7
• Sequence Name: T23F6.7
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including mrps-5; dpy-21; and ilc-17.1 based on RNA-seq and microarray studies. Is affected by Colistin and triclosan based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 634

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00045184

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

22 Allele

• gk964278
• gk964078
• gk963546
• gk963547
• gk964500
• gk962765
• gk962743
• gk697154
• gk444176
• gk686254
• gk717993
• gk484472
• gk900000
• gk476640
• gk671971
• WBVar00240824
• WBVar02121032
• otn18215
• gk215133
• gk215131
• WBVar01954183
• gk215132

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00045184
• Start: 12734262
• End: 12734895
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_12734896..12735171
• Length (nt): 276
• Chromosome Location: IV: 12734896-12735171
• Organism: Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_upregulated
Bacteria infection: Xenorhabdus nematophila	Caenorhabditis elegans Genes with expression levels changed significantly after treatment of Xenorhabdus nematophila.	Differential expression were calculated by empirical eBayes method using eBayes function. P_value <= 0.01 and log2 fold change > 1 were used to call differentially expressed genes in all datasets.	WBPaper00041606:CE_X.nematophila_regulated
	Genes down-regulated after 24 hour exposure to colistin.	Gene lists were created using a cutoff P-value of < 0.05, 2-fold change.	WBPaper00045673:colistin_downregulated
	Genes that showed decreased expression after germline ablation comparing to un-ablated animals.	The differential expression between germline-ablated versus gonad-ablated animals was computed via the functions makeContrasts and contrasts.fit in the limma package in R/Bioconductor.	WBPaper00045571:germline-ablation_downregulated
	Transcripts that showed significantly decreased expression after 24 hour exposure to 20umol/l Triclosan at L4 larva stage.	Fold change > 2, p-value < 0.05.	WBPaper00051387:Triclosan_downregulated
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts that showed significantly decreased expression in mrps-5(RNAi) comparing to in control animals.	Fold change > 4, p-value < 0.01	WBPaper00056330:mrps-5(RNAi)_downregulated
Bacteria infection: Serratia marcescens	Caenorhabditis elegans Genes with expression levels changed significantly after treatment of Serratia marcescens.	Differential expression were calculated by empirical eBayes method using eBayes function. P_value <= 0.01 and log2 fold change > 1 were used to call differentially expressed genes in all datasets.	WBPaper00041606:CE_S.marcescens_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00045184
• Start: 12734262
• End: 12734895
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 634

1 Sequence Ontology Term