WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00003358 Gene Name  mir-265
Sequence Name  ? T23F6.6 Brief Description  mir-265 encodes a microRNA, a small non-protein coding RNA; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-265 is unknown.
Organism  Caenorhabditis elegans Automated Description  Is affected by ilc-17.1 based on RNA-seq studies.
Biotype  SO:0001265 Genetic Position  IV :6.18464 ±0.009088
Length (nt)  ? 86
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00003358

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T23F6.6b T23F6.6b 20   IV: 12740450-12740469
 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk964278
gk964078
gk963546
gk963547
gk964500
gk962765
gk962743
gk432081
WBVar02121032
n4534

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00003358 12740443 12740528 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
space radition and microgravity Micro RNAs that showed decreased expression in space flight N2 samples comparing to in ground control, affected by space radition and microgravity. Differentially expressed miRNAs (>1.5-fold change and <0.67) and mRNAs (>2-fold change and <0.5) were identified through fold-change filtering. WBPaper00048474:SpaceRadiation-Microgravity_downregulated_N2

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr8438 Weak expression detected in head neurons and somatic cells of the uterus from L2 to adults.  
    Expr10971    

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00003358 12740443 12740528 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
86

1 Sequence Ontology Term