WormMine: Gene WBGene00220251

• WormBase Gene ID: WBGene00220251
• Gene Name: F07C6.8
• Sequence Name: F07C6.8
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including etr-1; spc-1; and lpd-3 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 1660

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00220251

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F07C6.8	F07C6.8	897	IV: 12797146-12798805

Other

0 CDSs

0 RNAi Result

28 Allele

• gk964278
• gk964078
• gk963546
• gk963547
• gk964500
• gk962765
• WBVar02123772
• WBVar02123633
• gk419556
• gk628337
• gk647220
• gk316875
• gk780931
• gk621472
• gk819506
• WBVar02123634
• WBVar01795966
• WBVar01570226
• WBVar01795965
• WBVar01570225
• WBVar01795964
• WBVar01803959
• WBVar01803958
• gk215263
• gk215261
• gk215262
• gk215260
• WBVar01967231

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00220251
• Start: 12797146
• End: 12798805
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_12798806..12805923
• Length (nt): 7118
• Chromosome Location: IV: 12798806-12805923
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-2(e1370)_upregulated_neuron
	Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-16(mu86)_upregulated_neuron
	Transcripts that showed altered expression in cat-2(RNAi) animals comparing to control animals injected with empty vector.	p-value <= 0.05	WBPaper00066902:cat-2(RNAi)_regulated
	Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals.	DESeq2, fold change > 4, FDR < 0.05.	WBPaper00064661:lpd-3(ok2138)_upregulated
	Transcripts that showed significantly increased expression in ints-9(RNAi) comparing to in N2.	DESeq2 and edgeR.	WBPaper00056284:ints-9(RNAi)_upregulated
	Transcripts that showed significantly increased expression in spc-1(cas971) comparing to in N2 at L1 larva stage.	DESeq2, fold change >= 2, FDR <= 0.05	WBPaper00057041:spc-1(cas971)_upregulated
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00220251
• Start: 12797146
• End: 12798805
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1660

1 Sequence Ontology Term