WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F07C6.4c.2 Sequence Name  F07C6.4c.2
Length (nt)  3484   Chromosome Location  IV: 12805924-12830111
Chromosome . Primary Identifier  IV Chromosome Location . Start  12805924
Chromosome Location . End  12830111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F07C6.4c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008555 F07C6.4 F07C6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F07C6.4c F07C6.4c 1716   IV: 12823388-12823514

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F07C6.4c.2 12805924 12830111 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon148596   129   IV: 12805924-12806052 Caenorhabditis elegans
Exon148602   113   IV: 12806101-12806213 Caenorhabditis elegans
Exon148607   99   IV: 12806260-12806358 Caenorhabditis elegans
Exon148612   85   IV: 12806419-12806503 Caenorhabditis elegans
Exon148617   77   IV: 12807687-12807763 Caenorhabditis elegans
Exon148622   153   IV: 12808939-12809091 Caenorhabditis elegans
Exon148630   231   IV: 12810086-12810316 Caenorhabditis elegans
Exon148637   87   IV: 12811432-12811518 Caenorhabditis elegans
Exon148643   151   IV: 12812667-12812817 Caenorhabditis elegans
Exon148652   110   IV: 12823033-12823142 Caenorhabditis elegans
Exon148661   158   IV: 12823357-12823514 Caenorhabditis elegans
Exon148669   254   IV: 12823568-12823821 Caenorhabditis elegans
Exon148682   229   IV: 12825401-12825629 Caenorhabditis elegans
Exon148690   169   IV: 12825687-12825855 Caenorhabditis elegans
Exon148698   213   IV: 12826550-12826762 Caenorhabditis elegans
Exon148704   73   IV: 12827548-12827620 Caenorhabditis elegans
Exon148711   383   IV: 12828144-12828526 Caenorhabditis elegans
Exon148720   770   IV: 12829342-12830111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F07C6.4c.2 12805924 12830111 1

1 Sequence

Length
3484

1 Sequence Ontology Term

Identifier Name Description
transcript