WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F07C6.4c.2 Sequence Name  F07C6.4c.2
Length (nt)  3484   Chromosome Location  IV: 12805924-12830111
Chromosome . Primary Identifier  IV Chromosome Location . Start  12805924
Chromosome Location . End  12830111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F07C6.4c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008555 F07C6.4 F07C6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F07C6.4c F07C6.4c 1716   IV: 12823388-12823514

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F07C6.4c.2 12805924 12830111 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon148651   129   IV: 12805924-12806052 Caenorhabditis elegans
Exon148657   113   IV: 12806101-12806213 Caenorhabditis elegans
Exon148662   99   IV: 12806260-12806358 Caenorhabditis elegans
Exon148667   85   IV: 12806419-12806503 Caenorhabditis elegans
Exon148672   77   IV: 12807687-12807763 Caenorhabditis elegans
Exon148677   153   IV: 12808939-12809091 Caenorhabditis elegans
Exon148685   231   IV: 12810086-12810316 Caenorhabditis elegans
Exon148692   87   IV: 12811432-12811518 Caenorhabditis elegans
Exon148698   151   IV: 12812667-12812817 Caenorhabditis elegans
Exon148707   110   IV: 12823033-12823142 Caenorhabditis elegans
Exon148716   158   IV: 12823357-12823514 Caenorhabditis elegans
Exon148724   254   IV: 12823568-12823821 Caenorhabditis elegans
Exon148737   229   IV: 12825401-12825629 Caenorhabditis elegans
Exon148745   169   IV: 12825687-12825855 Caenorhabditis elegans
Exon148753   213   IV: 12826550-12826762 Caenorhabditis elegans
Exon148759   73   IV: 12827548-12827620 Caenorhabditis elegans
Exon148766   383   IV: 12828144-12828526 Caenorhabditis elegans
Exon148775   770   IV: 12829342-12830111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F07C6.4c.2 12805924 12830111 1

1 Sequence

Length
3484

1 Sequence Ontology Term

Identifier Name Description
transcript