WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:JC8.6b Sequence Name  JC8.6b
Length (nt)  1290   Chromosome Location  IV: 13241068-13241193
Chromosome . Primary Identifier  IV Chromosome Location . Start  13241068
Chromosome Location . End  13241193
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
JC8.6b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE17990 LIN-54, isoform b 48.3 429 Caenorhabditis elegans
 

Other

15 RNAi

WormBase ID
WBRNAi00049574
WBRNAi00025827
WBRNAi00113549
WBRNAi00071821
WBRNAi00069936
WBRNAi00065868
WBRNAi00065869
WBRNAi00033795
WBRNAi00071489
WBRNAi00086710
WBRNAi00086715
WBRNAi00008940
WBRNAi00086554
WBRNAi00061529
WBRNAi00069998

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:JC8.6b 13241068 13241193 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003037 lin-54 JC8.6 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:JC8.6b 13241068 13241193 1
CDS:JC8.6b 13241245 13241391 1
CDS:JC8.6b 13241452 13241551 1
CDS:JC8.6b 13241598 13241703 1
CDS:JC8.6b 13241754 13242141 1
CDS:JC8.6b 13242683 13242928 1
CDS:JC8.6b 13242983 13243159 1

1 Sequence

Length
1290

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:JC8.6b.1 JC8.6b.1 1551   IV: 13241044-13243396