WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45F10A.6c.1 Sequence Name  Y45F10A.6c.1
Length (nt)  3929   Chromosome Location  IV: 13476932-13502856
Chromosome . Primary Identifier  IV Chromosome Location . Start  13476932
Chromosome Location . End  13502856 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45F10A.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012868 tbc-9 Y45F10A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10A.6c Y45F10A.6c 3738   IV: 13477112-13477151

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10A.6c.1 13476932 13502856 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon150417   220   IV: 13476932-13477151 Caenorhabditis elegans
Exon150428   123   IV: 13477993-13478115 Caenorhabditis elegans
Exon150433   406   IV: 13478158-13478563 Caenorhabditis elegans
Exon150442   157   IV: 13479656-13479812 Caenorhabditis elegans
Exon150447   415   IV: 13480421-13480835 Caenorhabditis elegans
Exon150454   110   IV: 13481947-13482056 Caenorhabditis elegans
Exon150465   207   IV: 13485527-13485733 Caenorhabditis elegans
Exon150472   246   IV: 13486747-13486992 Caenorhabditis elegans
Exon150481   753   IV: 13487915-13488667 Caenorhabditis elegans
Exon150488   246   IV: 13489486-13489731 Caenorhabditis elegans
Exon150495   133   IV: 13489795-13489927 Caenorhabditis elegans
Exon150529   144   IV: 13497766-13497909 Caenorhabditis elegans
Exon150536   146   IV: 13497960-13498105 Caenorhabditis elegans
Exon150546   134   IV: 13499040-13499173 Caenorhabditis elegans
Exon150550   87   IV: 13499228-13499314 Caenorhabditis elegans
Exon150555   96   IV: 13500819-13500914 Caenorhabditis elegans
Exon150559   248   IV: 13500974-13501221 Caenorhabditis elegans
Exon150563   58   IV: 13502799-13502856 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10A.6c.1 13476932 13502856 -1

1 Sequence

Length
3929

1 Sequence Ontology Term

Identifier Name Description
transcript