WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45F10A.6g.1 Sequence Name  Y45F10A.6g.1
Length (nt)  3923   Chromosome Location  IV: 13476932-13502856
Chromosome . Primary Identifier  IV Chromosome Location . Start  13476932
Chromosome Location . End  13502856 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45F10A.6g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012868 tbc-9 Y45F10A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10A.6g Y45F10A.6g 3732   IV: 13477112-13477151

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y45F10A.6g.1 13476932 13502856 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon150418   220   IV: 13476932-13477151 Caenorhabditis elegans
Exon150426   117   IV: 13477993-13478109 Caenorhabditis elegans
Exon150437   406   IV: 13478158-13478563 Caenorhabditis elegans
Exon150444   157   IV: 13479656-13479812 Caenorhabditis elegans
Exon150451   415   IV: 13480421-13480835 Caenorhabditis elegans
Exon150458   110   IV: 13481947-13482056 Caenorhabditis elegans
Exon150469   207   IV: 13485527-13485733 Caenorhabditis elegans
Exon150476   246   IV: 13486747-13486992 Caenorhabditis elegans
Exon150485   753   IV: 13487915-13488667 Caenorhabditis elegans
Exon150492   246   IV: 13489486-13489731 Caenorhabditis elegans
Exon150499   133   IV: 13489795-13489927 Caenorhabditis elegans
Exon150533   144   IV: 13497766-13497909 Caenorhabditis elegans
Exon150540   146   IV: 13497960-13498105 Caenorhabditis elegans
Exon150547   134   IV: 13499040-13499173 Caenorhabditis elegans
Exon150551   87   IV: 13499228-13499314 Caenorhabditis elegans
Exon150556   96   IV: 13500819-13500914 Caenorhabditis elegans
Exon150560   248   IV: 13500974-13501221 Caenorhabditis elegans
Exon150564   58   IV: 13502799-13502856 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y45F10A.6g.1 13476932 13502856 -1

1 Sequence

Length
3923

1 Sequence Ontology Term

Identifier Name Description
transcript