WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45F10A.6f.1 Sequence Name  Y45F10A.6f.1
Length (nt)  3171   Chromosome Location  IV: 13477112-13499084
Chromosome . Primary Identifier  IV Chromosome Location . Start  13477112
Chromosome Location . End  13499084 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45F10A.6f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012868 tbc-9 Y45F10A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10A.6f Y45F10A.6f 3171   IV: 13477112-13477151

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10A.6f.1 13477112 13499084 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon150423   40   IV: 13477112-13477151 Caenorhabditis elegans
Exon150430   123   IV: 13477993-13478115 Caenorhabditis elegans
Exon150436   406   IV: 13478158-13478563 Caenorhabditis elegans
Exon150443   157   IV: 13479656-13479812 Caenorhabditis elegans
Exon150450   415   IV: 13480421-13480835 Caenorhabditis elegans
Exon150457   110   IV: 13481947-13482056 Caenorhabditis elegans
Exon150468   207   IV: 13485527-13485733 Caenorhabditis elegans
Exon150475   246   IV: 13486747-13486992 Caenorhabditis elegans
Exon150484   753   IV: 13487915-13488667 Caenorhabditis elegans
Exon150491   246   IV: 13489486-13489731 Caenorhabditis elegans
Exon150498   133   IV: 13489795-13489927 Caenorhabditis elegans
Exon150532   144   IV: 13497766-13497909 Caenorhabditis elegans
Exon150539   146   IV: 13497960-13498105 Caenorhabditis elegans
Exon150543   45   IV: 13499040-13499084 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10A.6f.1 13477112 13499084 -1

1 Sequence

Length
3171

1 Sequence Ontology Term

Identifier Name Description
transcript