WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52G2.2b.1 Sequence Name  F52G2.2b.1
Length (nt)  3390   Chromosome Location  IV: 13522095-13538658
Chromosome . Primary Identifier  IV Chromosome Location . Start  13522095
Chromosome Location . End  13538658 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52G2.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004681 rsd-2 F52G2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52G2.2b F52G2.2b 3390   IV: 13522095-13522130

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52G2.2b.1 13522095 13538658 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon150673   36   IV: 13522095-13522130 Caenorhabditis elegans
Exon150675   561   IV: 13522873-13523433 Caenorhabditis elegans
Exon150679   240   IV: 13524357-13524596 Caenorhabditis elegans
Exon150683   177   IV: 13525737-13525913 Caenorhabditis elegans
Exon150687   103   IV: 13525979-13526081 Caenorhabditis elegans
Exon150692   156   IV: 13526134-13526289 Caenorhabditis elegans
Exon150695   109   IV: 13529251-13529359 Caenorhabditis elegans
Exon150698   176   IV: 13529410-13529585 Caenorhabditis elegans
Exon150701   128   IV: 13529636-13529763 Caenorhabditis elegans
Exon150704   106   IV: 13530721-13530826 Caenorhabditis elegans
Exon150707   164   IV: 13530880-13531043 Caenorhabditis elegans
Exon150710   217   IV: 13531629-13531845 Caenorhabditis elegans
Exon150713   279   IV: 13532312-13532590 Caenorhabditis elegans
Exon150717   177   IV: 13532638-13532814 Caenorhabditis elegans
Exon150719   366   IV: 13534270-13534635 Caenorhabditis elegans
Exon150723   143   IV: 13537352-13537494 Caenorhabditis elegans
Exon150725   133   IV: 13537550-13537682 Caenorhabditis elegans
Exon150726   119   IV: 13538540-13538658 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52G2.2b.1 13522095 13538658 -1

1 Sequence

Length
3390

1 Sequence Ontology Term

Identifier Name Description
transcript