WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45F10B.13a.1 Sequence Name  Y45F10B.13a.1
Length (nt)  2200   Chromosome Location  IV: 13549605-13561729
Chromosome . Primary Identifier  IV Chromosome Location . Start  13549605
Chromosome Location . End  13561729 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45F10B.13a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012875 Y45F10B.13 Y45F10B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10B.13a Y45F10B.13a 1902   IV: 13549762-13549782

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10B.13a.1 13549605 13561729 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon150690   178   IV: 13549605-13549782 Caenorhabditis elegans
Exon150693   56   IV: 13549831-13549886 Caenorhabditis elegans
Exon150696   79   IV: 13549936-13550014 Caenorhabditis elegans
Exon150699   89   IV: 13550587-13550675 Caenorhabditis elegans
Exon150702   218   IV: 13550726-13550943 Caenorhabditis elegans
Exon150705   60   IV: 13552156-13552215 Caenorhabditis elegans
Exon150710   81   IV: 13557406-13557486 Caenorhabditis elegans
Exon150712   135   IV: 13557798-13557932 Caenorhabditis elegans
Exon150715   384   IV: 13558936-13559319 Caenorhabditis elegans
Exon150718   224   IV: 13559394-13559617 Caenorhabditis elegans
Exon150720   472   IV: 13559724-13560195 Caenorhabditis elegans
Exon150723   224   IV: 13561506-13561729 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10B.13a.1 13549605 13561729 -1

1 Sequence

Length
2200

1 Sequence Ontology Term

Identifier Name Description
transcript