WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45F10D.13d.1 Sequence Name  Y45F10D.13d.1
Length (nt)  3173   Chromosome Location  IV: 13750333-13770497
Chromosome . Primary Identifier  IV Chromosome Location . Start  13750333
Chromosome Location . End  13770497 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45F10D.13d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012891 sorb-1 Y45F10D.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10D.13d Y45F10D.13d 3024   IV: 13750336-13750374

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10D.13d.1 13750333 13770497 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon151465   42   IV: 13750333-13750374 Caenorhabditis elegans
Exon151468   205   IV: 13750423-13750627 Caenorhabditis elegans
Exon151473   131   IV: 13751043-13751173 Caenorhabditis elegans
Exon151483   854   IV: 13752481-13753334 Caenorhabditis elegans
Exon151488   101   IV: 13754128-13754228 Caenorhabditis elegans
Exon151500   345   IV: 13755691-13756035 Caenorhabditis elegans
Exon151541   138   IV: 13761780-13761917 Caenorhabditis elegans
Exon151563   127   IV: 13765817-13765943 Caenorhabditis elegans
Exon151571   159   IV: 13766579-13766737 Caenorhabditis elegans
Exon151577   205   IV: 13766993-13767197 Caenorhabditis elegans
Exon151588   311   IV: 13768865-13769175 Caenorhabditis elegans
Exon151592   240   IV: 13769288-13769527 Caenorhabditis elegans
Exon151605   315   IV: 13770183-13770497 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10D.13d.1 13750333 13770497 1

1 Sequence

Length
3173

1 Sequence Ontology Term

Identifier Name Description
transcript