WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H08M01.2c.1 Sequence Name  H08M01.2c.1
Length (nt)  1602   Chromosome Location  IV: 13839411-13844909
Chromosome . Primary Identifier  IV Chromosome Location . Start  13839411
Chromosome Location . End  13844909 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H08M01.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010374 rga-5 H08M01.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H08M01.2c H08M01.2c 1602   IV: 13839411-13839481

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H08M01.2c.1 13839411 13844909 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon151890   71   IV: 13839411-13839481 Caenorhabditis elegans
Exon151893   62   IV: 13839579-13839640 Caenorhabditis elegans
Exon151898   58   IV: 13839906-13839963 Caenorhabditis elegans
Exon151901   127   IV: 13840117-13840243 Caenorhabditis elegans
Exon151906   130   IV: 13840480-13840609 Caenorhabditis elegans
Exon151909   414   IV: 13841100-13841513 Caenorhabditis elegans
Exon151916   92   IV: 13842070-13842161 Caenorhabditis elegans
Exon151919   144   IV: 13842369-13842512 Caenorhabditis elegans
Exon151923   87   IV: 13842637-13842723 Caenorhabditis elegans
Exon151929   150   IV: 13843175-13843324 Caenorhabditis elegans
Exon151935   158   IV: 13844509-13844666 Caenorhabditis elegans
Exon151938   109   IV: 13844801-13844909 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H08M01.2c.1 13839411 13844909 1

1 Sequence

Length
1602

1 Sequence Ontology Term

Identifier Name Description
transcript