WormMine: Gene WBGene00049393

• WormBase Gene ID: WBGene00049393
• Gene Name: 21ur-2893
• Sequence Name: Y37A1B.123
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by lem-2; emr-1; and semo-1 based on RNA-seq studies.
• Biotype: SO:0001638
• Genetic Position: IV :11.2513±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00049393

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y37A1B.123	Y37A1B.123	21	IV: 14051495-14051515

Other

0 CDSs

0 RNAi Result

9 Allele

• gk964078
• gk963546
• gk963547
• gk964500
• gk962765
• gk964111
• gk964110
• gk962794
• WBVar00194526

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00049393
• Start: 14051495
• End: 14051515
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	piRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).	DESeq2 v1.13.8, fold change > 2, FDR < 0.01.	WBPaper00056161:male_enriched_piRNA
	Genes that showed increased mRNA expression in emr-1(RNAi);lem-2(tm1582) comparing to N2.	Library siggenes in R was applied to select the differentially expressed loci using the false discovery rate-based SAM method. Genes presenting a delta value > 4 were considered to be significantly altered.	WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
	Transcripts that showed significantly increased expression in Y37A1B.5(RNAi) comparing to N2 animals injected with empty vector at young adult stage.	DESeq2 v1.16.1, fold change > 2, adjusted p-value < 0.05.	WBPaper00058648:Y37A1B.5(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00049393
• Start: 14051495
• End: 14051515
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term