WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y37A1C.1h.1 Sequence Name  Y37A1C.1h.1
Length (nt)  4062   Chromosome Location  IV: 14107720-14115708
Chromosome . Primary Identifier  IV Chromosome Location . Start  14107720
Chromosome Location . End  14115708 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y37A1C.1h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012543 nkcc-1 Y37A1C.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y37A1C.1h Y37A1C.1h 3567   IV: 14108149-14108284

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1h.1 14107720 14115708 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon153170   565   IV: 14107720-14108284 Caenorhabditis elegans
Exon153184   413   IV: 14108342-14108754 Caenorhabditis elegans
Exon153192   73   IV: 14109105-14109177 Caenorhabditis elegans
Exon153200   184   IV: 14109226-14109409 Caenorhabditis elegans
Exon153212   236   IV: 14110635-14110870 Caenorhabditis elegans
Exon153221   266   IV: 14110916-14111181 Caenorhabditis elegans
Exon153230   470   IV: 14111793-14112262 Caenorhabditis elegans
Exon153238   232   IV: 14112539-14112770 Caenorhabditis elegans
Exon153246   497   IV: 14112915-14113411 Caenorhabditis elegans
Exon153254   184   IV: 14113464-14113647 Caenorhabditis elegans
Exon153261   312   IV: 14114280-14114591 Caenorhabditis elegans
Exon153270   372   IV: 14114971-14115342 Caenorhabditis elegans
Exon153278   150   IV: 14115407-14115556 Caenorhabditis elegans
Exon153279   108   IV: 14115601-14115708 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1h.1 14107720 14115708 -1

1 Sequence

Length
4062

1 Sequence Ontology Term

Identifier Name Description
transcript