WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y37A1C.1c.1 Sequence Name  Y37A1C.1c.1
Length (nt)  4086   Chromosome Location  IV: 14107721-14116059
Chromosome . Primary Identifier  IV Chromosome Location . Start  14107721
Chromosome Location . End  14116059 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y37A1C.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012543 nkcc-1 Y37A1C.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y37A1C.1c Y37A1C.1c 3633   IV: 14108149-14108284

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1c.1 14107721 14116059 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon153173   564   IV: 14107721-14108284 Caenorhabditis elegans
Exon153177   413   IV: 14108342-14108754 Caenorhabditis elegans
Exon153185   73   IV: 14109105-14109177 Caenorhabditis elegans
Exon153193   184   IV: 14109226-14109409 Caenorhabditis elegans
Exon153205   236   IV: 14110635-14110870 Caenorhabditis elegans
Exon153214   266   IV: 14110916-14111181 Caenorhabditis elegans
Exon153224   470   IV: 14111793-14112262 Caenorhabditis elegans
Exon153232   232   IV: 14112539-14112770 Caenorhabditis elegans
Exon153240   497   IV: 14112915-14113411 Caenorhabditis elegans
Exon153249   184   IV: 14113464-14113647 Caenorhabditis elegans
Exon153256   312   IV: 14114280-14114591 Caenorhabditis elegans
Exon153265   372   IV: 14114971-14115342 Caenorhabditis elegans
Exon153273   144   IV: 14115407-14115550 Caenorhabditis elegans
Exon153284   139   IV: 14115921-14116059 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1c.1 14107721 14116059 -1

1 Sequence

Length
4086

1 Sequence Ontology Term

Identifier Name Description
transcript