WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y37A1C.1g.1 Sequence Name  Y37A1C.1g.1
Length (nt)  4229   Chromosome Location  IV: 14107721-14124056
Chromosome . Primary Identifier  IV Chromosome Location . Start  14107721
Chromosome Location . End  14124056 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y37A1C.1g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012543 nkcc-1 Y37A1C.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y37A1C.1g Y37A1C.1g 3708   IV: 14108149-14108284

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1g.1 14107721 14124056 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon153174   564   IV: 14107721-14108284 Caenorhabditis elegans
Exon153182   413   IV: 14108342-14108754 Caenorhabditis elegans
Exon153190   73   IV: 14109105-14109177 Caenorhabditis elegans
Exon153198   184   IV: 14109226-14109409 Caenorhabditis elegans
Exon153202   75   IV: 14110475-14110549 Caenorhabditis elegans
Exon153210   236   IV: 14110635-14110870 Caenorhabditis elegans
Exon153219   266   IV: 14110916-14111181 Caenorhabditis elegans
Exon153228   470   IV: 14111793-14112262 Caenorhabditis elegans
Exon153236   232   IV: 14112539-14112770 Caenorhabditis elegans
Exon153244   497   IV: 14112915-14113411 Caenorhabditis elegans
Exon153252   184   IV: 14113464-14113647 Caenorhabditis elegans
Exon153259   312   IV: 14114280-14114591 Caenorhabditis elegans
Exon153268   372   IV: 14114971-14115342 Caenorhabditis elegans
Exon153276   144   IV: 14115407-14115550 Caenorhabditis elegans
Exon153283   132   IV: 14115921-14116052 Caenorhabditis elegans
Exon153315   75   IV: 14123982-14124056 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1g.1 14107721 14124056 -1

1 Sequence

Length
4229

1 Sequence Ontology Term

Identifier Name Description
transcript