WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y37A1C.1a.1 Sequence Name  Y37A1C.1a.1
Length (nt)  2948   Chromosome Location  IV: 14110455-14116063
Chromosome . Primary Identifier  IV Chromosome Location . Start  14110455
Chromosome Location . End  14116063 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y37A1C.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012543 nkcc-1 Y37A1C.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y37A1C.1a Y37A1C.1a 2919   IV: 14110455-14110546

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1a.1 14110455 14116063 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon153201   92   IV: 14110455-14110546 Caenorhabditis elegans
Exon153204   236   IV: 14110635-14110870 Caenorhabditis elegans
Exon153213   266   IV: 14110916-14111181 Caenorhabditis elegans
Exon153223   470   IV: 14111793-14112262 Caenorhabditis elegans
Exon153231   232   IV: 14112539-14112770 Caenorhabditis elegans
Exon153239   497   IV: 14112915-14113411 Caenorhabditis elegans
Exon153248   184   IV: 14113464-14113647 Caenorhabditis elegans
Exon153255   312   IV: 14114280-14114591 Caenorhabditis elegans
Exon153263   372   IV: 14114971-14115342 Caenorhabditis elegans
Exon153271   144   IV: 14115407-14115550 Caenorhabditis elegans
Exon153285   143   IV: 14115921-14116063 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1a.1 14110455 14116063 -1

1 Sequence

Length
2948

1 Sequence Ontology Term

Identifier Name Description
transcript