WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55B11.1.1 Sequence Name  F55B11.1.1
Length (nt)  4155   Chromosome Location  IV: 14401114-14412894
Chromosome . Primary Identifier  IV Chromosome Location . Start  14401114
Chromosome Location . End  14412894 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55B11.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010083 xdh-1 F55B11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55B11.1 F55B11.1 4077   IV: 14401184-14401312

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55B11.1.1 14401114 14412894 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon154738   199   IV: 14401114-14401312 Caenorhabditis elegans
Exon154746   466   IV: 14401784-14402249 Caenorhabditis elegans
Exon154753   257   IV: 14403109-14403365 Caenorhabditis elegans
Exon154762   178   IV: 14404583-14404760 Caenorhabditis elegans
Exon154768   331   IV: 14405427-14405757 Caenorhabditis elegans
Exon154772   94   IV: 14406070-14406163 Caenorhabditis elegans
Exon154775   459   IV: 14406720-14407178 Caenorhabditis elegans
Exon154792   411   IV: 14408422-14408832 Caenorhabditis elegans
Exon154796   633   IV: 14409482-14410114 Caenorhabditis elegans
Exon154798   310   IV: 14410228-14410537 Caenorhabditis elegans
Exon154805   152   IV: 14411006-14411157 Caenorhabditis elegans
Exon154806   114   IV: 14411217-14411330 Caenorhabditis elegans
Exon154808   196   IV: 14411577-14411772 Caenorhabditis elegans
Exon154811   126   IV: 14411986-14412111 Caenorhabditis elegans
Exon154816   91   IV: 14412472-14412562 Caenorhabditis elegans
Exon154818   138   IV: 14412757-14412894 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55B11.1.1 14401114 14412894 -1

1 Sequence

Length
4155

1 Sequence Ontology Term

Identifier Name Description
transcript