WormMine: Gene WBGene00005286

• WormBase Gene ID: WBGene00005286
• Gene Name: srh-65
• Sequence Name: T27E7.2
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including cyc-1; glh-4; and glh-1 based on microarray and RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: IV :12.1918 ±0.000856
• Length (nt): 1214

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005286

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

30 Allele

• gk964078
• gk963546
• gk963547
• gk964500
• gk962765
• gk963590
• gk963795
• gk964199
• gk963781
• WBVar02021837
• WBVar01732579
• WBVar00195273
• WBVar00195271
• WBVar00195272
• WBVar01732577
• WBVar01732578
• gk418858
• gk386560
• gk418857
• gk406265
• gk519600
• gk832259
• gk713316
• gk366064
• WBVar02055944
• ttTi26217
• WBVar01806097
• WBVar01839283
• gk218365
• gk218364

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005286
• Start: 14522464
• End: 14523677
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_14523678..14523867
• Length (nt): 190
• Chromosome Location: IV: 14523678-14523867
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
	Significantly downregulated genes from cyc-1(RNAi) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.	SAM algorithm with an FDR < 0.1.	WBPaper00033065:cyc-1(RNAi)_downregulated
	Transcripts that showed significantly increased expression in alg-1(gk204) comparing to in N2 at 5-days post L4 adult hermaphrodites.	DESeq, fold change > 2, adjusted p-value < 0.05.	WBPaper00054758:alg-1(gk204)_upregulated
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts that showed significantly decreased expression in eat-2(ad465) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:eat-2(ad465)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005286
• Start: 14522464
• End: 14523677
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1214

1 Sequence Ontology Term