WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y57G11C.42a.1 Sequence Name  Y57G11C.42a.1
Length (nt)  2290   Chromosome Location  IV: 14728533-14745671
Chromosome . Primary Identifier  IV Chromosome Location . Start  14728533
Chromosome Location . End  14745671 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y57G11C.42a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013331 Y57G11C.42 Y57G11C.42 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y57G11C.42a Y57G11C.42a 2022   IV: 14734350-14734527

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y57G11C.42a.1 14728533 14745671 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon156454   54   IV: 14728533-14728586 Caenorhabditis elegans
Exon156492   180   IV: 14734348-14734527 Caenorhabditis elegans
Exon156500   117   IV: 14734926-14735042 Caenorhabditis elegans
Exon156513   314   IV: 14735511-14735824 Caenorhabditis elegans
Exon156519   121   IV: 14735875-14735995 Caenorhabditis elegans
Exon156529   172   IV: 14736752-14736923 Caenorhabditis elegans
Exon156547   327   IV: 14738282-14738608 Caenorhabditis elegans
Exon156561   131   IV: 14741631-14741761 Caenorhabditis elegans
Exon156572   86   IV: 14741907-14741992 Caenorhabditis elegans
Exon156583   327   IV: 14742527-14742853 Caenorhabditis elegans
Exon156600   122   IV: 14744047-14744168 Caenorhabditis elegans
Exon156625   339   IV: 14745333-14745671 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y57G11C.42a.1 14728533 14745671 1

1 Sequence

Length
2290

1 Sequence Ontology Term

Identifier Name Description
transcript