WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y57G11C.24i.1 Sequence Name  Y57G11C.24i.1
Length (nt)  3056   Chromosome Location  IV: 14879491-14900545
Chromosome . Primary Identifier  IV Chromosome Location . Start  14879491
Chromosome Location . End  14900545 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y57G11C.24i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001330 eps-8 Y57G11C.24 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y57G11C.24i Y57G11C.24i 2829   IV: 14879566-14879615

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y57G11C.24i.1 14879491 14900545 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon157184   125   IV: 14879491-14879615 Caenorhabditis elegans
Exon157226   131   IV: 14885573-14885703 Caenorhabditis elegans
Exon157238   221   IV: 14886614-14886834 Caenorhabditis elegans
Exon157255   228   IV: 14888379-14888606 Caenorhabditis elegans
Exon157267   124   IV: 14889210-14889333 Caenorhabditis elegans
Exon157292   311   IV: 14891464-14891774 Caenorhabditis elegans
Exon157304   233   IV: 14891833-14892065 Caenorhabditis elegans
Exon157320   178   IV: 14893787-14893964 Caenorhabditis elegans
Exon157327   75   IV: 14894167-14894241 Caenorhabditis elegans
Exon157337   104   IV: 14894341-14894444 Caenorhabditis elegans
Exon157348   316   IV: 14894534-14894849 Caenorhabditis elegans
Exon157360   111   IV: 14894906-14895016 Caenorhabditis elegans
Exon157374   67   IV: 14896060-14896126 Caenorhabditis elegans
Exon157389   185   IV: 14897321-14897505 Caenorhabditis elegans
Exon157401   82   IV: 14897620-14897701 Caenorhabditis elegans
Exon157414   157   IV: 14898130-14898286 Caenorhabditis elegans
Exon157427   136   IV: 14898645-14898780 Caenorhabditis elegans
Exon157455   272   IV: 14900274-14900545 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y57G11C.24i.1 14879491 14900545 1

1 Sequence

Length
3056

1 Sequence Ontology Term

Identifier Name Description
transcript