WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y57G11C.24i.1 Sequence Name  Y57G11C.24i.1
Length (nt)  3056   Chromosome Location  IV: 14879491-14900545
Chromosome . Primary Identifier  IV Chromosome Location . Start  14879491
Chromosome Location . End  14900545 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y57G11C.24i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001330 eps-8 Y57G11C.24 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y57G11C.24i Y57G11C.24i 2829   IV: 14879566-14879615

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y57G11C.24i.1 14879491 14900545 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon157239   125   IV: 14879491-14879615 Caenorhabditis elegans
Exon157281   131   IV: 14885573-14885703 Caenorhabditis elegans
Exon157293   221   IV: 14886614-14886834 Caenorhabditis elegans
Exon157310   228   IV: 14888379-14888606 Caenorhabditis elegans
Exon157322   124   IV: 14889210-14889333 Caenorhabditis elegans
Exon157347   311   IV: 14891464-14891774 Caenorhabditis elegans
Exon157359   233   IV: 14891833-14892065 Caenorhabditis elegans
Exon157375   178   IV: 14893787-14893964 Caenorhabditis elegans
Exon157382   75   IV: 14894167-14894241 Caenorhabditis elegans
Exon157392   104   IV: 14894341-14894444 Caenorhabditis elegans
Exon157403   316   IV: 14894534-14894849 Caenorhabditis elegans
Exon157415   111   IV: 14894906-14895016 Caenorhabditis elegans
Exon157429   67   IV: 14896060-14896126 Caenorhabditis elegans
Exon157444   185   IV: 14897321-14897505 Caenorhabditis elegans
Exon157456   82   IV: 14897620-14897701 Caenorhabditis elegans
Exon157469   157   IV: 14898130-14898286 Caenorhabditis elegans
Exon157482   136   IV: 14898645-14898780 Caenorhabditis elegans
Exon157510   272   IV: 14900274-14900545 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y57G11C.24i.1 14879491 14900545 1

1 Sequence

Length
3056

1 Sequence Ontology Term

Identifier Name Description
transcript