WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y57G11C.24n.1 Sequence Name  Y57G11C.24n.1
Length (nt)  2832   Chromosome Location  IV: 14879563-14900393
Chromosome . Primary Identifier  IV Chromosome Location . Start  14879563
Chromosome Location . End  14900393 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y57G11C.24n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001330 eps-8 Y57G11C.24 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y57G11C.24n Y57G11C.24n 2832   IV: 14879563-14879615

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y57G11C.24n.1 14879563 14900393 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon157240   53   IV: 14879563-14879615 Caenorhabditis elegans
Exon157282   131   IV: 14885573-14885703 Caenorhabditis elegans
Exon157295   221   IV: 14886614-14886834 Caenorhabditis elegans
Exon157313   228   IV: 14888379-14888606 Caenorhabditis elegans
Exon157325   124   IV: 14889210-14889333 Caenorhabditis elegans
Exon157350   311   IV: 14891464-14891774 Caenorhabditis elegans
Exon157363   233   IV: 14891833-14892065 Caenorhabditis elegans
Exon157379   178   IV: 14893787-14893964 Caenorhabditis elegans
Exon157386   75   IV: 14894167-14894241 Caenorhabditis elegans
Exon157396   104   IV: 14894341-14894444 Caenorhabditis elegans
Exon157407   316   IV: 14894534-14894849 Caenorhabditis elegans
Exon157419   111   IV: 14894906-14895016 Caenorhabditis elegans
Exon157433   67   IV: 14896060-14896126 Caenorhabditis elegans
Exon157448   185   IV: 14897321-14897505 Caenorhabditis elegans
Exon157461   82   IV: 14897620-14897701 Caenorhabditis elegans
Exon157474   157   IV: 14898130-14898286 Caenorhabditis elegans
Exon157487   136   IV: 14898645-14898780 Caenorhabditis elegans
Exon157508   120   IV: 14900274-14900393 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y57G11C.24n.1 14879563 14900393 1

1 Sequence

Length
2832

1 Sequence Ontology Term

Identifier Name Description
transcript