WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41E3.3a.1 Sequence Name  Y41E3.3a.1
Length (nt)  1654   Chromosome Location  IV: 14981625-14996318
Chromosome . Primary Identifier  IV Chromosome Location . Start  14981625
Chromosome Location . End  14996318 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41E3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012763 atln-2 Y41E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41E3.3a Y41E3.3a 1563   IV: 14981628-14981720

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y41E3.3a.1 14981625 14996318 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon157867   96   IV: 14981625-14981720 Caenorhabditis elegans
Exon157892   96   IV: 14985440-14985535 Caenorhabditis elegans
Exon157916   184   IV: 14989515-14989698 Caenorhabditis elegans
Exon157918   68   IV: 14989743-14989810 Caenorhabditis elegans
Exon157928   90   IV: 14990763-14990852 Caenorhabditis elegans
Exon157935   114   IV: 14991327-14991440 Caenorhabditis elegans
Exon157946   232   IV: 14993087-14993318 Caenorhabditis elegans
Exon157954   413   IV: 14994364-14994776 Caenorhabditis elegans
Exon157963   133   IV: 14995911-14996043 Caenorhabditis elegans
Exon157966   228   IV: 14996091-14996318 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y41E3.3a.1 14981625 14996318 1

1 Sequence

Length
1654

1 Sequence Ontology Term

Identifier Name Description
transcript