WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41E3.9a.1 Sequence Name  Y41E3.9a.1
Length (nt)  4429   Chromosome Location  IV: 15025710-15037036
Chromosome . Primary Identifier  IV Chromosome Location . Start  15025710
Chromosome Location . End  15037036 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41E3.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012767 fcd-2 Y41E3.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41E3.9a Y41E3.9a 4323   IV: 15025721-15025793

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y41E3.9a.1 15025710 15037036 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon158131   84   IV: 15025710-15025793 Caenorhabditis elegans
Exon158132   391   IV: 15025847-15026237 Caenorhabditis elegans
Exon158133   1108   IV: 15026286-15027393 Caenorhabditis elegans
Exon158134   132   IV: 15028240-15028371 Caenorhabditis elegans
Exon158141   628   IV: 15029863-15030490 Caenorhabditis elegans
Exon158143   432   IV: 15031414-15031845 Caenorhabditis elegans
Exon158145   421   IV: 15032423-15032843 Caenorhabditis elegans
Exon158148   266   IV: 15034083-15034348 Caenorhabditis elegans
Exon158151   671   IV: 15035011-15035681 Caenorhabditis elegans
Exon158156   296   IV: 15036741-15037036 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y41E3.9a.1 15025710 15037036 1

1 Sequence

Length
4429

1 Sequence Ontology Term

Identifier Name Description
transcript