WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199541 Gene Name  Y41E3.460
Sequence Name  ? Y41E3.460 Organism  Caenorhabditis elegans
Automated Description  Enriched in AVK and neurons based on RNA-seq studies. Is affected by several genes including kri-1; mpk-2; and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 225
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199541

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y41E3.460 Y41E3.460 225   IV: 15059461-15059685
 

Other

0 CDSs

0 RNAi Result

13 Allele

Public Name
gk964078
gk964500
gk962765
gk963590
gk963795
gk963948
WBVar00576950
WBVar02123399
WBVar02124711
WBVar02123400
WBVar02123472
WBVar02124602
WBVar02122624

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199541 15059461 15059685 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_15058695..15059460   766 IV: 15058695-15059460 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals. Fold change > 2, FDR < 0.01. WBPaper00065993:glp-1(e2141)_upregulated
  Transcripts that showed significantly increased expression in WD485[mpk-2(ok219)] comparing to in N2. N.A. WBPaper00056586:mpk-2(ok219)_upregulated
  Transcripts that showed significantly increased expression in WD61[kri-1(ok1251)] comparing to in N2. N.A. WBPaper00056586:kri-1(ok1251)_upregulated
  Transcripts that showed significantly increased expression in malt-1(db1194);npr-1(ad609) animals, in npr-1(ad609) ilc-17.1(tm5218) animals, and in npr-1(ad609) nfki-1(db1198) animals, comparing to the wild type control npr-1(ad609). Cufflinks (v2.2.1). q < 0.05. WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
  Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage. edgeR, FDR < 0.001, fold change > 2. WBPaper00055565:AVK_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199541 15059461 15059685 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
225

1 Sequence Ontology Term