WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196400 Gene Name  Y73F8A.1164
Sequence Name  ? Y73F8A.1164 Organism  Caenorhabditis elegans
Biotype  SO:0001263 Genetic Position 
Length (nt)  ? 96
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196400

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y73F8A.1164 Y73F8A.1164 96   IV: 15318466-15318561
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk964078
gk964500
gk962765
gk963378
gk963590
gk963377
gk963795
gk963948
WBVar02038077
tm11279
gk963961
gk961128

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00196400 15318466 15318561 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Small RNAs (less than 200 bases long) that showed significantly increased expression in rpc-1(RNAi) animals. DESeq2, fold change > 2, FDR < 0.05. WBPaper00067416:rpc-1(RNAi)_upregulated_smallRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00196400 15318466 15318561 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
96

1 Sequence Ontology Term