WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73F8A.21a.1 Sequence Name  Y73F8A.21a.1
Length (nt)  2324   Chromosome Location  IV: 15400280-15407412
Chromosome . Primary Identifier  IV Chromosome Location . Start  15400280
Chromosome Location . End  15407412 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73F8A.21a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003604 nhr-5 Y73F8A.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73F8A.21a Y73F8A.21a 2019   IV: 15400333-15400402

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73F8A.21a.1 15400280 15407412 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon159806   123   IV: 15400280-15400402 Caenorhabditis elegans
Exon159808   62   IV: 15400451-15400512 Caenorhabditis elegans
Exon159814   139   IV: 15400970-15401108 Caenorhabditis elegans
Exon159818   63   IV: 15401332-15401394 Caenorhabditis elegans
Exon159824   173   IV: 15401828-15402000 Caenorhabditis elegans
Exon159827   246   IV: 15402065-15402310 Caenorhabditis elegans
Exon159831   149   IV: 15403163-15403311 Caenorhabditis elegans
Exon159841   274   IV: 15404061-15404334 Caenorhabditis elegans
Exon159845   222   IV: 15404818-15405039 Caenorhabditis elegans
Exon159851   111   IV: 15405324-15405434 Caenorhabditis elegans
Exon159861   148   IV: 15406483-15406630 Caenorhabditis elegans
Exon159866   614   IV: 15406799-15407412 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73F8A.21a.1 15400280 15407412 1

1 Sequence

Length
2324

1 Sequence Ontology Term

Identifier Name Description
transcript