WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73F8A.21c.1 Sequence Name  Y73F8A.21c.1
Length (nt)  2379   Chromosome Location  IV: 15400277-15407416
Chromosome . Primary Identifier  IV Chromosome Location . Start  15400277
Chromosome Location . End  15407416 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73F8A.21c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003604 nhr-5 Y73F8A.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73F8A.21c Y73F8A.21c 2067   IV: 15400333-15400402

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73F8A.21c.1 15400277 15407416 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon159826   126   IV: 15400277-15400402 Caenorhabditis elegans
Exon159830   62   IV: 15400451-15400512 Caenorhabditis elegans
Exon159836   139   IV: 15400970-15401108 Caenorhabditis elegans
Exon159840   63   IV: 15401332-15401394 Caenorhabditis elegans
Exon159846   173   IV: 15401828-15402000 Caenorhabditis elegans
Exon159849   246   IV: 15402065-15402310 Caenorhabditis elegans
Exon159853   149   IV: 15403163-15403311 Caenorhabditis elegans
Exon159863   274   IV: 15404061-15404334 Caenorhabditis elegans
Exon159867   222   IV: 15404818-15405039 Caenorhabditis elegans
Exon159873   111   IV: 15405324-15405434 Caenorhabditis elegans
Exon159881   48   IV: 15406393-15406440 Caenorhabditis elegans
Exon159883   148   IV: 15406483-15406630 Caenorhabditis elegans
Exon159888   618   IV: 15406799-15407416 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73F8A.21c.1 15400277 15407416 1

1 Sequence

Length
2379

1 Sequence Ontology Term

Identifier Name Description
transcript