WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5A.15e.1 Sequence Name  Y105C5A.15e.1
Length (nt)  2571   Chromosome Location  IV: 15689201-15721805
Chromosome . Primary Identifier  IV Chromosome Location . Start  15689201
Chromosome Location . End  15721805 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5A.15e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013639 Y105C5A.15 Y105C5A.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5A.15e Y105C5A.15e 2571   IV: 15689201-15689256

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5A.15e.1 15689201 15721805 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon161056   56   IV: 15689201-15689256 Caenorhabditis elegans
Exon161117   154   IV: 15703360-15703513 Caenorhabditis elegans
Exon161127   148   IV: 15705391-15705538 Caenorhabditis elegans
Exon161165   176   IV: 15712868-15713043 Caenorhabditis elegans
Exon161176   84   IV: 15714094-15714177 Caenorhabditis elegans
Exon161183   141   IV: 15714312-15714452 Caenorhabditis elegans
Exon161201   342   IV: 15718120-15718461 Caenorhabditis elegans
Exon161207   368   IV: 15718942-15719309 Caenorhabditis elegans
Exon161211   166   IV: 15719364-15719529 Caenorhabditis elegans
Exon161221   731   IV: 15720325-15721055 Caenorhabditis elegans
Exon161227   205   IV: 15721601-15721805 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5A.15e.1 15689201 15721805 1

1 Sequence

Length
2571

1 Sequence Ontology Term

Identifier Name Description
transcript