WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.2b.1 Sequence Name  Y105C5B.2b.1
Length (nt)  2946   Chromosome Location  IV: 15872960-15882377
Chromosome . Primary Identifier  IV Chromosome Location . Start  15872960
Chromosome Location . End  15882377 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001549 gcy-25 Y105C5B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.2b Y105C5B.2b 2946   IV: 15872960-15873099

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y105C5B.2b.1 15872960 15882377 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon161974   140   IV: 15872960-15873099 Caenorhabditis elegans
Exon161976   186   IV: 15873496-15873681 Caenorhabditis elegans
Exon161983   91   IV: 15874325-15874415 Caenorhabditis elegans
Exon161990   148   IV: 15874926-15875073 Caenorhabditis elegans
Exon161992   109   IV: 15875123-15875231 Caenorhabditis elegans
Exon161996   169   IV: 15875601-15875769 Caenorhabditis elegans
Exon161998   294   IV: 15875920-15876213 Caenorhabditis elegans
Exon162003   342   IV: 15876882-15877223 Caenorhabditis elegans
Exon162007   72   IV: 15877514-15877585 Caenorhabditis elegans
Exon162011   180   IV: 15877639-15877818 Caenorhabditis elegans
Exon162017   187   IV: 15878250-15878436 Caenorhabditis elegans
Exon162026   178   IV: 15879622-15879799 Caenorhabditis elegans
Exon162031   144   IV: 15880331-15880474 Caenorhabditis elegans
Exon162035   124   IV: 15880720-15880843 Caenorhabditis elegans
Exon162039   174   IV: 15881241-15881414 Caenorhabditis elegans
Exon162041   110   IV: 15881545-15881654 Caenorhabditis elegans
Exon162045   154   IV: 15881831-15881984 Caenorhabditis elegans
Exon162048   144   IV: 15882234-15882377 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y105C5B.2b.1 15872960 15882377 1

1 Sequence

Length
2946

1 Sequence Ontology Term

Identifier Name Description
transcript