WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.11a.1 Sequence Name  Y105C5B.11a.1
Length (nt)  1802   Chromosome Location  IV: 15937062-15941491
Chromosome . Primary Identifier  IV Chromosome Location . Start  15937062
Chromosome Location . End  15941491 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013651 Y105C5B.11 Y105C5B.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.11a Y105C5B.11a 1752   IV: 15937112-15937201

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.11a.1 15937062 15941491 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162319   140   IV: 15937062-15937201 Caenorhabditis elegans
Exon162322   250   IV: 15937376-15937625 Caenorhabditis elegans
Exon162324   493   IV: 15937679-15938171 Caenorhabditis elegans
Exon162326   73   IV: 15938220-15938292 Caenorhabditis elegans
Exon162328   381   IV: 15938840-15939220 Caenorhabditis elegans
Exon162330   252   IV: 15939523-15939774 Caenorhabditis elegans
Exon162334   213   IV: 15941279-15941491 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.11a.1 15937062 15941491 -1

1 Sequence

Length
1802

1 Sequence Ontology Term

Identifier Name Description
transcript