Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y105C5B.1086 | Y105C5B.1086 |
21
 |
IV: 15951177-15951197 |
Other
13 Allele
| Public Name |
|---|
| gk964078 |
| gk964500 |
| gk962765 |
| gk963378 |
| gk963590 |
| gk963377 |
| gk963795 |
| gk963704 |
| gk962529 |
| gk963948 |
| gk963888 |
| WBVar02123686 |
| WBVar02123261 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00170862 | 15951177 | 15951197 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_15951198..15951721 | 524 | IV: 15951198-15951721 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_upregulated_neuron | |
| Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. | Student's t-test, fold change > 2, p-value < 0.05. | WBPaper00055386:daf-2(e1370)_upregulated | |
| Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals. | DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. | WBPaper00060014:set-2(tm1630)_upregulated | |
| Transcripts that showed significantly increased expression in ints-5(RNAi) comparing to in N2. | DESeq2 and edgeR. | WBPaper00056284:ints-5(RNAi)_upregulated |