WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y7A9A.1.1 Sequence Name  Y7A9A.1.1
Length (nt)  2344   Chromosome Location  IV: 16197017-16201745
Chromosome . Primary Identifier  IV Chromosome Location . Start  16197017
Chromosome Location . End  16201745 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y7A9A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012416 Y7A9A.1 Y7A9A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y7A9A.1 Y7A9A.1 1824   IV: 16197082-16197146

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y7A9A.1.1 16197017 16201745 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon163644   130   IV: 16197017-16197146 Caenorhabditis elegans
Exon163647   195   IV: 16197456-16197650 Caenorhabditis elegans
Exon163648   123   IV: 16197703-16197825 Caenorhabditis elegans
Exon163651   428   IV: 16198571-16198998 Caenorhabditis elegans
Exon163654   93   IV: 16199394-16199486 Caenorhabditis elegans
Exon163655   96   IV: 16199537-16199632 Caenorhabditis elegans
Exon163656   151   IV: 16199709-16199859 Caenorhabditis elegans
Exon163657   71   IV: 16199911-16199981 Caenorhabditis elegans
Exon163658   91   IV: 16200026-16200116 Caenorhabditis elegans
Exon163659   287   IV: 16200364-16200650 Caenorhabditis elegans
Exon163662   68   IV: 16200869-16200936 Caenorhabditis elegans
Exon163664   611   IV: 16201135-16201745 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y7A9A.1.1 16197017 16201745 1

1 Sequence

Length
2344

1 Sequence Ontology Term

Identifier Name Description
transcript