WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014862 Gene Name  Y7A9C.2
Sequence Name  ? Y7A9C.2 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 based on microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 2622
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014862

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

66 Allele

Public Name
gk964078
gk964500
gk962765
gk963378
gk963590
gk963377
gk963795
gk963704
gk962529
gk963948
gk963888
WBVar02123836
WBVar02121229
WBVar02123109
tm10006
WBVar02123691
WBVar02124716
WBVar02124220
WBVar02122633
WBVar02121890
WBVar02124488
WBVar00091102
WBVar01821821
WBVar01658904
WBVar01658905
WBVar01658906
WBVar01658907
WBVar01658900
WBVar01658901
WBVar01658902

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014862 16303614 16306235 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_16306236..16306311   76 IV: 16306236-16306311 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014862 16303614 16306235 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2622

1 Sequence Ontology Term