Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:C35D6.6 | C35D6.6 |
119
 |
IV: 16337010-16337128 |
Other
24 Allele
| Public Name |
|---|
| gk964078 |
| gk964500 |
| gk962765 |
| gk963378 |
| gk963590 |
| gk963377 |
| gk963795 |
| gk963704 |
| gk962529 |
| gk963948 |
| gk963888 |
| WBVar02123836 |
| WBVar02121229 |
| WBVar02123109 |
| WBVar02123691 |
| WBVar02124716 |
| WBVar02124220 |
| WBVar02122633 |
| WBVar02121890 |
| WBVar02124488 |
| WBVar00091102 |
| WBVar02124124 |
| WBVar02124031 |
| gk711789 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00014277 | 16337010 | 16337128 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_16336504..16337009 | 506 | IV: 16336504-16337009 | Caenorhabditis elegans |
1 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts down regulated in hpl-2(tm1489) embryo comparing to N2 in tiling array analysis. | Oligos from the tiling array were mapped to chromosome coordinates of the exons from Wormbase WS180. Any oligo that mapped to a gene on both the Watson and Crick strands was excluded. The remaining oligos were then grouped together (perfect match and mismatch) into probe sets and written out into an Affymetrix CDF file. The CDF file was converted into an R-package and loaded into R. The expression values were calculated using the justRMA function from Bioconductor. This used a Benjamini and Hochberg false discovery rate correction. | WBPaper00040560:hpl-2_embryo_downregulated |