WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00220129 Gene Name  Y10G11A.91
Sequence Name  ? Y10G11A.91 Organism  Caenorhabditis elegans
Automated Description  Is affected by hda-2; ceh-14; and ogt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 126
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00220129

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y10G11A.91 Y10G11A.91 126   IV: 16428729-16428854
 

Other

0 CDSs

0 RNAi Result

16 Allele

Public Name
gk964078
gk964500
gk962765
gk963590
gk963795
gk963704
gk962529
gk963948
gk963888
tm11040
gk911319
gk221611
gk730318
WBVar01969797
WBVar02115143
WBVar02000454

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00220129 16428729 16428854 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals. DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. WBPaper00062159:hda-2(ok1479)_upregulated
Diet: supplementation of dietary fat P-80. Transcripts that showed significantly decreased expression in animals grown with supplementation of dietary fat P-80. Differential expression was assessed using an empirical Bayes moderated t test within limmas linear model framework including the precisio weights estimated by voom. Fold change > 2, FDR < 0.05 WBPaper00062534:fat-P-80_downregulated
  Transcripts that showed significantly increased expression in ceh-14(ch3) comparing to in N2 at L4 larva stage. DESeq2(1.36.0), fold change > 2, FDR < 0.05. WBPaper00066004:ceh-14(ch3)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00220129 16428729 16428854 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
126

1 Sequence Ontology Term